PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021185
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 255aa    MW: 28413.5 Da    PI: 4.9802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021185genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd+ll ++++ +G ++W++ ++  g+ R++k+c++rw +yl
      Lus10021185 14 RGPWTPEEDQLLTCYIQNHGHPNWRALPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding49.59.9e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
      Lus10021185  67 RGNFTRDEEDTIIRLHHSLGNR-WSAIAAELP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.466961IPR017930Myb domain
SuperFamilySSF466893.96E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-161461IPR001005SANT/Myb domain
CDDcd001672.63E-111661No hitNo description
PROSITE profilePS5129423.92462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565117IPR009057Homeodomain-like
SMARTSM007177.5E-1466114IPR001005SANT/Myb domain
PfamPF002498.1E-1567112IPR001005SANT/Myb domain
CDDcd001679.89E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRAPCCEKK GLKRGPWTPE EDQLLTCYIQ NHGHPNWRAL PKLAGLLRCG KSCRLRWINY  60
LNPHIKRGNF TRDEEDTIIR LHHSLGNRWS AIAAELPGRT DNEIKNVWHT HLKKRLNQNN  120
NQGKQQSAET QKQSYAPLSP DQLSFSSNSS GAAVSSVTAD NSLPTAETSN YVELPSPTSL  180
DDFPIIDEDL WSDPSQTEES VNMQFDDTQI NFSDFWGLST VEGSNGGGVV PGICDSVDFW  240
YDMLVQAGEI EGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26121175109B-MYB
1gv2_A6e-26121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-25121164159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-25121164159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
1mse_C6e-26121162105C-Myb DNA-Binding Domain
1msf_C6e-26121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8847961e-116HQ884796.1 Linum usitatissimum clone Contig612 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311670.11e-85hypothetical protein POPTR_0008s16660g
TrEMBLB9HKG61e-85B9HKG6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16660.13e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-73myb domain protein 15